Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MIR7706-201ENST00000613747 67 ntBASIC18.38■□□□□ 0.53
KRT39Q6A163 AC005593.1-201ENST00000624894 515 ntBASIC18.38■□□□□ 0.53
KRT39Q6A163 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC18.38■□□□□ 0.53
KRT39Q6A163 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
KRT39Q6A163 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.37■□□□□ 0.53
KRT39Q6A163 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 IGHV3-65-201ENST00000523210 341 ntBASIC18.37■□□□□ 0.53
KRT39Q6A163 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 AL049840.3-201ENST00000602669 611 ntBASIC18.37■□□□□ 0.53
KRT39Q6A163 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.37■□□□□ 0.53
KRT39Q6A163 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 AC002310.6-201ENST00000624451 1377 ntBASIC18.37■□□□□ 0.53
KRT39Q6A163 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC18.37■□□□□ 0.53
KRT39Q6A163 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 AGGF1P2-201ENST00000426656 2106 ntBASIC18.37■□□□□ 0.53
KRT39Q6A163 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 RNF216P1-203ENST00000404404 2427 ntBASIC18.37■□□□□ 0.53
KRT39Q6A163 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
KRT39Q6A163 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
KRT39Q6A163 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
KRT39Q6A163 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC18.36■□□□□ 0.53
KRT39Q6A163 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
KRT39Q6A163 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC18.36■□□□□ 0.53
KRT39Q6A163 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.36■□□□□ 0.53
KRT39Q6A163 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.36■□□□□ 0.53
KRT39Q6A163 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.36■□□□□ 0.53
KRT39Q6A163 AC009078.2-202ENST00000463353 338 ntBASIC18.36■□□□□ 0.53
KRT39Q6A163 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC18.36■□□□□ 0.53
KRT39Q6A163 RNA5SP419-201ENST00000515908 135 ntBASIC18.36■□□□□ 0.53
KRT39Q6A163 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC18.36■□□□□ 0.53
KRT39Q6A163 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC18.36■□□□□ 0.53
KRT39Q6A163 AP001005.1-201ENST00000571755 1248 ntBASIC18.36■□□□□ 0.53
KRT39Q6A163 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC18.36■□□□□ 0.53
KRT39Q6A163 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.36■□□□□ 0.53
KRT39Q6A163 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.36■□□□□ 0.53
KRT39Q6A163 AC078925.2-201ENST00000624013 1973 ntBASIC18.36■□□□□ 0.53
KRT39Q6A163 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
KRT39Q6A163 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC18.35■□□□□ 0.53
KRT39Q6A163 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
KRT39Q6A163 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
KRT39Q6A163 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC18.35■□□□□ 0.53
KRT39Q6A163 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 TOP3BP1-201ENST00000420768 1380 ntBASIC18.35■□□□□ 0.53
KRT39Q6A163 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
KRT39Q6A163 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms