Protein–RNA interactions for Protein: Q2KHR2

RFX7, DNA-binding protein RFX7, humanhuman

Predictions only

Length 1,363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX7Q2KHR2 AD000864.1-201ENST00000624076 2295 ntBASIC20.47■□□□□ 0.87
RFX7Q2KHR2 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 CYMP-203ENST00000474680 1263 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 AP002472.1-201ENST00000577490 586 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 AC007064.4-201ENST00000637740 555 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 ACTG1P14-201ENST00000446382 1122 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 SNHG9-202ENST00000564014 471 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 AC005412.3-201ENST00000580309 715 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 AL139011.1-202ENST00000642063 584 ntBASIC20.46■□□□□ 0.87
RFX7Q2KHR2 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RFX7Q2KHR2 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
RFX7Q2KHR2 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC20.45■□□□□ 0.87
RFX7Q2KHR2 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 MIR4492-201ENST00000581627 80 ntBASIC20.45■□□□□ 0.86
RFX7Q2KHR2 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RFX7Q2KHR2 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC20.44■□□□□ 0.86
RFX7Q2KHR2 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 AC099522.2-201ENST00000607001 744 ntBASIC20.44■□□□□ 0.86
RFX7Q2KHR2 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
RFX7Q2KHR2 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms