Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SF3A1Q15459 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SF3A1Q15459 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 THAP5-204ENST00000438865 868 ntTSL 2 BASIC19.71■□□□□ 0.75
SF3A1Q15459 TPM1-226ENST00000560959 925 ntTSL 2 BASIC19.71■□□□□ 0.75
SF3A1Q15459 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SF3A1Q15459 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SF3A1Q15459 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 PKD1P5-201ENST00000532415 10291 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SF3A1Q15459 RNF216P1-203ENST00000404404 2427 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 NUS1P2-201ENST00000417358 873 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
SF3A1Q15459 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 MIR5100-201ENST00000579544 119 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 AC093458.2-201ENST00000623150 629 ntBASIC19.7■□□□□ 0.74
SF3A1Q15459 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
SF3A1Q15459 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SF3A1Q15459 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SF3A1Q15459 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SF3A1Q15459 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 COX5A-204ENST00000567270 579 ntTSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.69■□□□□ 0.74
SF3A1Q15459 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.69■□□□□ 0.74
SF3A1Q15459 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 TNRC18P3-201ENST00000441896 2691 ntBASIC19.69■□□□□ 0.74
SF3A1Q15459 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SF3A1Q15459 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC19.69■□□□□ 0.74
SF3A1Q15459 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SF3A1Q15459 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19.69■□□□□ 0.74
SF3A1Q15459 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC19.68■□□□□ 0.74
SF3A1Q15459 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
SF3A1Q15459 GPR89P-201ENST00000407924 1495 ntBASIC19.68■□□□□ 0.74
SF3A1Q15459 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SF3A1Q15459 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC19.68■□□□□ 0.74
SF3A1Q15459 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms