Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
RNF4P78317 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
RNF4P78317 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.75■□□□□ 0.11
RNF4P78317 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 FAM185BP-201ENST00000443595 716 ntBASIC15.75■□□□□ 0.11
RNF4P78317 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC15.75■□□□□ 0.11
RNF4P78317 AC040169.1-201ENST00000565382 521 ntBASIC15.75■□□□□ 0.11
RNF4P78317 AC018845.2-201ENST00000568326 409 ntBASIC15.75■□□□□ 0.11
RNF4P78317 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.75■□□□□ 0.11
RNF4P78317 REXO1L3P-201ENST00000622202 1288 ntBASIC15.75■□□□□ 0.11
RNF4P78317 AC010507.1-201ENST00000633895 436 ntBASIC15.75■□□□□ 0.11
RNF4P78317 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
RNF4P78317 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
RNF4P78317 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
RNF4P78317 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
RNF4P78317 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 FER1L4-210ENST00000615531 5998 ntBASIC15.74■□□□□ 0.11
RNF4P78317 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.74■□□□□ 0.11
RNF4P78317 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.74■□□□□ 0.11
RNF4P78317 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF4P78317 AC107918.2-201ENST00000530817 355 ntBASIC15.74■□□□□ 0.11
RNF4P78317 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF4P78317 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.74■□□□□ 0.11
RNF4P78317 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.74■□□□□ 0.11
RNF4P78317 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.74■□□□□ 0.11
RNF4P78317 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC15.74■□□□□ 0.11
RNF4P78317 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
RNF4P78317 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.73■□□□□ 0.11
RNF4P78317 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC15.73■□□□□ 0.11
RNF4P78317 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
RNF4P78317 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
RNF4P78317 RHOQP3-201ENST00000437982 621 ntBASIC15.73■□□□□ 0.11
RNF4P78317 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC15.73■□□□□ 0.11
RNF4P78317 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms