Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 LINC00896-202ENST00000609602 2128 ntBASIC13.9□□□□□ -0.18
LMO4P61968 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
LMO4P61968 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC13.9□□□□□ -0.19
LMO4P61968 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
LMO4P61968 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.19
LMO4P61968 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC13.89□□□□□ -0.19
LMO4P61968 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 RBPMS2P1-201ENST00000437762 623 ntBASIC13.89□□□□□ -0.19
LMO4P61968 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 AC067863.1-201ENST00000494933 530 ntBASIC13.89□□□□□ -0.19
LMO4P61968 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.89□□□□□ -0.19
LMO4P61968 VPS29-207ENST00000549970 818 ntTSL 3 BASIC13.89□□□□□ -0.19
LMO4P61968 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 SSH2-211ENST00000590153 570 ntTSL 4 BASIC13.89□□□□□ -0.19
LMO4P61968 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC13.89□□□□□ -0.19
LMO4P61968 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 RHBDF1P1-201ENST00000427504 1941 ntBASIC13.89□□□□□ -0.19
LMO4P61968 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
LMO4P61968 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 UXT-AS1-201ENST00000590504 1525 ntBASIC13.89□□□□□ -0.19
LMO4P61968 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
LMO4P61968 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMO4P61968 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
LMO4P61968 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.88□□□□□ -0.19
LMO4P61968 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 AC108860.2-201ENST00000562760 2183 ntBASIC13.88□□□□□ -0.19
LMO4P61968 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
LMO4P61968 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 CDK2AP2P3-201ENST00000422476 372 ntBASIC13.88□□□□□ -0.19
LMO4P61968 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 AC069262.1-201ENST00000539058 672 ntBASIC13.88□□□□□ -0.19
LMO4P61968 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 SPCS2P1-201ENST00000561636 679 ntBASIC13.88□□□□□ -0.19
LMO4P61968 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 MIR3197-201ENST00000582241 73 ntBASIC13.88□□□□□ -0.19
LMO4P61968 AC027307.2-201ENST00000591252 911 ntBASIC13.88□□□□□ -0.19
LMO4P61968 AC011467.4-201ENST00000594891 528 ntBASIC13.88□□□□□ -0.19
LMO4P61968 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC13.88□□□□□ -0.19
LMO4P61968 AC008267.7-201ENST00000624570 1194 ntBASIC13.88□□□□□ -0.19
LMO4P61968 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 AC016027.1-202ENST00000607927 1699 ntBASIC13.88□□□□□ -0.19
LMO4P61968 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMO4P61968 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMO4P61968 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
LMO4P61968 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LMO4P61968 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms