Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC14.2□□□□□ -0.14
HOXA1P49639 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 AP006294.2-201ENST00000641667 209 ntBASIC14.2□□□□□ -0.14
HOXA1P49639 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 AC138035.3-201ENST00000622706 2791 ntBASIC14.2□□□□□ -0.14
HOXA1P49639 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
HOXA1P49639 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
HOXA1P49639 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HOXA1P49639 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA1P49639 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC14.19□□□□□ -0.14
HOXA1P49639 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA1P49639 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA1P49639 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXA1P49639 ECEL1P2-202ENST00000465689 757 ntBASIC14.19□□□□□ -0.14
HOXA1P49639 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HOXA1P49639 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXA1P49639 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC14.19□□□□□ -0.14
HOXA1P49639 AC024563.2-201ENST00000603282 481 ntBASIC14.19□□□□□ -0.14
HOXA1P49639 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 FAM87A-204ENST00000613235 858 ntBASIC14.19□□□□□ -0.14
HOXA1P49639 CLN6-221ENST00000637494 765 ntTSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HOXA1P49639 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HOXA1P49639 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC14.19□□□□□ -0.14
HOXA1P49639 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC14.19□□□□□ -0.14
HOXA1P49639 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HOXA1P49639 CYP2D8P-201ENST00000433633 1490 ntBASIC14.18□□□□□ -0.14
HOXA1P49639 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HOXA1P49639 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HOXA1P49639 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HOXA1P49639 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
HOXA1P49639 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
HOXA1P49639 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA1P49639 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA1P49639 AC010947.1-201ENST00000623454 693 ntBASIC14.18□□□□□ -0.14
HOXA1P49639 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC14.18□□□□□ -0.14
HOXA1P49639 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA1P49639 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms