Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
NKX2-1P43699 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC14□□□□□ -0.17
NKX2-1P43699 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
NKX2-1P43699 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX2-1P43699 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
NKX2-1P43699 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14□□□□□ -0.17
NKX2-1P43699 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
NKX2-1P43699 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC14□□□□□ -0.17
NKX2-1P43699 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
NKX2-1P43699 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX2-1P43699 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14□□□□□ -0.17
NKX2-1P43699 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
NKX2-1P43699 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14□□□□□ -0.17
NKX2-1P43699 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC14□□□□□ -0.17
NKX2-1P43699 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.99□□□□□ -0.17
NKX2-1P43699 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.99□□□□□ -0.17
NKX2-1P43699 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC13.99□□□□□ -0.17
NKX2-1P43699 KRT18P48-201ENST00000434763 852 ntBASIC13.99□□□□□ -0.17
NKX2-1P43699 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC13.99□□□□□ -0.17
NKX2-1P43699 SNORA78-201ENST00000459373 127 ntBASIC13.99□□□□□ -0.17
NKX2-1P43699 AC034232.1-201ENST00000506026 1064 ntBASIC13.99□□□□□ -0.17
NKX2-1P43699 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC13.99□□□□□ -0.17
NKX2-1P43699 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX2-1P43699 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC13.99□□□□□ -0.17
NKX2-1P43699 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.99□□□□□ -0.17
NKX2-1P43699 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
NKX2-1P43699 AL365203.3-201ENST00000609742 2057 ntBASIC13.99□□□□□ -0.17
NKX2-1P43699 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
NKX2-1P43699 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
NKX2-1P43699 MIR1238-201ENST00000408483 83 ntBASIC13.98□□□□□ -0.17
NKX2-1P43699 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 MTCL1P1-201ENST00000446207 792 ntBASIC13.98□□□□□ -0.17
NKX2-1P43699 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
NKX2-1P43699 MIR4497-201ENST00000583208 89 ntBASIC13.98□□□□□ -0.17
NKX2-1P43699 MIR600HG-201ENST00000449175 5984 ntBASIC13.98□□□□□ -0.17
NKX2-1P43699 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC13.98□□□□□ -0.17
NKX2-1P43699 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
NKX2-1P43699 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC13.98□□□□□ -0.17
NKX2-1P43699 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms