Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC100778.2-201ENST00000580150 483 ntTSL 5 BASIC17.46■□□□□ 0.39
COL6A3P12111 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
COL6A3P12111 KC6-205ENST00000599934 556 ntTSL 4 BASIC17.46■□□□□ 0.39
COL6A3P12111 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL6A3P12111 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
COL6A3P12111 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A3P12111 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A3P12111 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A3P12111 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 ADM-202ENST00000524948 584 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
COL6A3P12111 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 AL607033.1-201ENST00000623900 1599 ntBASIC17.45■□□□□ 0.38
COL6A3P12111 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A3P12111 YBX1P6-201ENST00000442962 1002 ntBASIC17.45■□□□□ 0.38
COL6A3P12111 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC17.45■□□□□ 0.38
COL6A3P12111 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A3P12111 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.45■□□□□ 0.38
COL6A3P12111 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.45■□□□□ 0.38
COL6A3P12111 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
COL6A3P12111 SLC22A20-204ENST00000530038 1673 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC17.44■□□□□ 0.38
COL6A3P12111 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 HLA-H-201ENST00000383620 1096 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 RN7SL618P-201ENST00000477850 296 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 IMP3P2-201ENST00000489760 475 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.44■□□□□ 0.38
COL6A3P12111 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.44■□□□□ 0.38
COL6A3P12111 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 REXO1L11P-201ENST00000620964 1927 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.44■□□□□ 0.38
COL6A3P12111 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 RNU1-129P-201ENST00000384064 167 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC17.44■□□□□ 0.38
COL6A3P12111 U1.21-201ENST00000580816 167 ntBASIC17.44■□□□□ 0.38
COL6A3P12111 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
COL6A3P12111 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.44■□□□□ 0.38
COL6A3P12111 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
COL6A3P12111 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
COL6A3P12111 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.43■□□□□ 0.38
COL6A3P12111 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.43■□□□□ 0.38
COL6A3P12111 AC018635.2-201ENST00000608625 364 ntBASIC17.43■□□□□ 0.38
COL6A3P12111 MSTO2P-201ENST00000314835 1709 ntBASIC17.43■□□□□ 0.38
COL6A3P12111 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms