Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC243562.1-201ENST00000560672 389 ntBASIC19.98■□□□□ 0.79
HLA-DOAP06340 MPDU1-223ENST00000582151 728 ntBASIC19.98■□□□□ 0.79
HLA-DOAP06340 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC19.98■□□□□ 0.79
HLA-DOAP06340 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
HLA-DOAP06340 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
HLA-DOAP06340 AC131009.4-201ENST00000624048 1740 ntBASIC19.98■□□□□ 0.79
HLA-DOAP06340 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.98■□□□□ 0.79
HLA-DOAP06340 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
HLA-DOAP06340 AC018470.1-201ENST00000624790 3129 ntBASIC19.98■□□□□ 0.79
HLA-DOAP06340 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 AC007613.1-201ENST00000572811 2597 ntBASIC19.97■□□□□ 0.79
HLA-DOAP06340 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 RNU1-129P-201ENST00000384064 167 ntBASIC19.97■□□□□ 0.79
HLA-DOAP06340 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 TSFM-210ENST00000550559 897 ntTSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 AC093520.2-201ENST00000561830 333 ntBASIC19.97■□□□□ 0.79
HLA-DOAP06340 U1.21-201ENST00000580816 167 ntBASIC19.97■□□□□ 0.79
HLA-DOAP06340 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC19.97■□□□□ 0.79
HLA-DOAP06340 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
HLA-DOAP06340 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC092474.2-201ENST00000424288 719 ntBASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC109322.1-201ENST00000524499 1264 ntBASIC19.96■□□□□ 0.79
HLA-DOAP06340 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 MIR3909-201ENST00000579518 119 ntBASIC19.96■□□□□ 0.79
HLA-DOAP06340 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
HLA-DOAP06340 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
HLA-DOAP06340 STX3-203ENST00000529177 1571 ntTSL 2 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 PMS2P4-201ENST00000412466 1052 ntBASIC19.95■□□□□ 0.78
HLA-DOAP06340 KRT18P32-201ENST00000424695 1287 ntBASIC19.95■□□□□ 0.78
HLA-DOAP06340 IGHV3-62-201ENST00000520057 340 ntBASIC19.95■□□□□ 0.78
HLA-DOAP06340 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
HLA-DOAP06340 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC19.95■□□□□ 0.78
HLA-DOAP06340 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms