Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
SEMA3DO95025 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.35■□□□□ 0.21
SEMA3DO95025 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 AKR1C7P-201ENST00000305623 895 ntBASIC16.35■□□□□ 0.21
SEMA3DO95025 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.35■□□□□ 0.21
SEMA3DO95025 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 AP002414.1-201ENST00000391405 1147 ntBASIC16.35■□□□□ 0.21
SEMA3DO95025 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 KRT18P56-201ENST00000507275 550 ntBASIC16.35■□□□□ 0.21
SEMA3DO95025 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.35■□□□□ 0.21
SEMA3DO95025 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.35■□□□□ 0.21
SEMA3DO95025 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 AL139424.1-201ENST00000607572 797 ntBASIC16.35■□□□□ 0.21
SEMA3DO95025 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SEMA3DO95025 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
SEMA3DO95025 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SEMA3DO95025 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SEMA3DO95025 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SEMA3DO95025 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 AC105020.1-201ENST00000435356 2205 ntBASIC16.34■□□□□ 0.21
SEMA3DO95025 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC16.34■□□□□ 0.21
SEMA3DO95025 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.34■□□□□ 0.21
SEMA3DO95025 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.34■□□□□ 0.21
SEMA3DO95025 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
SEMA3DO95025 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.34■□□□□ 0.21
SEMA3DO95025 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
SEMA3DO95025 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
SEMA3DO95025 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 TUBB8P12-201ENST00000308911 1335 ntBASIC16.34■□□□□ 0.21
SEMA3DO95025 TUBB7P-202ENST00000428444 1305 ntBASIC16.34■□□□□ 0.21
SEMA3DO95025 TUBB8P7-204ENST00000567960 1332 ntBASIC16.34■□□□□ 0.21
SEMA3DO95025 AL590787.1-201ENST00000568856 1315 ntBASIC16.34■□□□□ 0.21
SEMA3DO95025 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.34■□□□□ 0.21
SEMA3DO95025 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
SEMA3DO95025 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
SEMA3DO95025 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
SEMA3DO95025 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
SEMA3DO95025 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
SEMA3DO95025 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.33■□□□□ 0.21
SEMA3DO95025 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.33■□□□□ 0.21
SEMA3DO95025 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.33■□□□□ 0.21
SEMA3DO95025 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SEMA3DO95025 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
SEMA3DO95025 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 AL513477.1-201ENST00000602865 2407 ntBASIC16.33■□□□□ 0.2
SEMA3DO95025 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SEMA3DO95025 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
SEMA3DO95025 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.33■□□□□ 0.2
SEMA3DO95025 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.33■□□□□ 0.2
SEMA3DO95025 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SEMA3DO95025 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
SEMA3DO95025 SART3-203ENST00000546611 1184 ntBASIC16.33■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms