Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF40O75150 AL049840.3-201ENST00000602669 611 ntBASIC18.45■□□□□ 0.54
RNF40O75150 MIR7706-201ENST00000613747 67 ntBASIC18.45■□□□□ 0.54
RNF40O75150 AL355877.3-201ENST00000622820 899 ntBASIC18.45■□□□□ 0.54
RNF40O75150 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
RNF40O75150 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC18.45■□□□□ 0.54
RNF40O75150 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
RNF40O75150 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
RNF40O75150 HYMAI-201ENST00000635591 3347 ntBASIC18.45■□□□□ 0.54
RNF40O75150 AC026691.1-201ENST00000602502 2017 ntBASIC18.45■□□□□ 0.54
RNF40O75150 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
RNF40O75150 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF40O75150 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 AC068472.1-201ENST00000474589 881 ntBASIC18.44■□□□□ 0.54
RNF40O75150 RNPS1P1-201ENST00000507437 918 ntBASIC18.44■□□□□ 0.54
RNF40O75150 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF40O75150 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC18.44■□□□□ 0.54
RNF40O75150 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
RNF40O75150 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 AC060834.1-201ENST00000443027 2032 ntBASIC18.44■□□□□ 0.54
RNF40O75150 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
RNF40O75150 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
RNF40O75150 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
RNF40O75150 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF40O75150 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
RNF40O75150 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF40O75150 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 FGFR3P6-201ENST00000457012 610 ntBASIC18.43■□□□□ 0.54
RNF40O75150 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC18.43■□□□□ 0.54
RNF40O75150 POLD2P1-201ENST00000511220 997 ntBASIC18.43■□□□□ 0.54
RNF40O75150 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC18.43■□□□□ 0.54
RNF40O75150 AC106730.1-201ENST00000566722 1090 ntBASIC18.43■□□□□ 0.54
RNF40O75150 MTDHP3-201ENST00000594186 672 ntBASIC18.43■□□□□ 0.54
RNF40O75150 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.43■□□□□ 0.54
RNF40O75150 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
RNF40O75150 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
RNF40O75150 AC068418.2-201ENST00000577309 3703 ntBASIC18.43■□□□□ 0.54
RNF40O75150 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 BANP-204ENST00000393208 2283 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
RNF40O75150 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.42■□□□□ 0.54
RNF40O75150 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms