Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.06■□□□□ 0.32
SHOX2O60902 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SHOX2O60902 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.05■□□□□ 0.32
SHOX2O60902 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 AC002310.6-201ENST00000624451 1377 ntBASIC17.05■□□□□ 0.32
SHOX2O60902 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SHOX2O60902 BANP-203ENST00000393207 2438 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
SHOX2O60902 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.05■□□□□ 0.32
SHOX2O60902 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.05■□□□□ 0.32
SHOX2O60902 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC17.05■□□□□ 0.32
SHOX2O60902 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 FAM197Y4-202ENST00000622692 608 ntBASIC17.05■□□□□ 0.32
SHOX2O60902 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.05■□□□□ 0.32
SHOX2O60902 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC17.05■□□□□ 0.32
SHOX2O60902 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
SHOX2O60902 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SHOX2O60902 GPR89P-201ENST00000407924 1495 ntBASIC17.05■□□□□ 0.32
SHOX2O60902 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SHOX2O60902 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 SSR4P1-203ENST00000599569 2260 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 LINC00895-201ENST00000629028 1637 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 GRAMD4P1-201ENST00000435181 1110 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.04■□□□□ 0.32
SHOX2O60902 SEC1P-202ENST00000473944 940 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.04■□□□□ 0.32
SHOX2O60902 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SHOX2O60902 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 CDC14C-201ENST00000428251 1719 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC17.04■□□□□ 0.32
SHOX2O60902 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.04■□□□□ 0.32
SHOX2O60902 AC016027.1-202ENST00000607927 1699 ntBASIC17.04■□□□□ 0.32
SHOX2O60902 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
SHOX2O60902 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.03■□□□□ 0.32
SHOX2O60902 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC17.03■□□□□ 0.32
SHOX2O60902 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.03■□□□□ 0.32
SHOX2O60902 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.03■□□□□ 0.32
SHOX2O60902 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.03■□□□□ 0.32
SHOX2O60902 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SHOX2O60902 AC096633.1-201ENST00000422446 749 ntBASIC17.03■□□□□ 0.32
SHOX2O60902 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms