Protein–RNA interactions for Protein: O43679

LDB2, LIM domain-binding protein 2, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB2O43679 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB2O43679 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB2O43679 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
LDB2O43679 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
LDB2O43679 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.02■□□□□ 0.31
LDB2O43679 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.02■□□□□ 0.31
LDB2O43679 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.02■□□□□ 0.31
LDB2O43679 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
LDB2O43679 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.02■□□□□ 0.31
LDB2O43679 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
LDB2O43679 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB2O43679 FDX1P1-201ENST00000449115 551 ntBASIC17.01■□□□□ 0.31
LDB2O43679 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.01■□□□□ 0.31
LDB2O43679 SLC25A6P2-201ENST00000497974 877 ntBASIC17.01■□□□□ 0.31
LDB2O43679 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB2O43679 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 AL049840.3-201ENST00000602669 611 ntBASIC17.01■□□□□ 0.31
LDB2O43679 AC008667.4-201ENST00000607370 168 ntBASIC17.01■□□□□ 0.31
LDB2O43679 AL773604.1-201ENST00000617417 272 ntBASIC17.01■□□□□ 0.31
LDB2O43679 REXO1L3P-201ENST00000622202 1288 ntBASIC17.01■□□□□ 0.31
LDB2O43679 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.01■□□□□ 0.31
LDB2O43679 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.01■□□□□ 0.31
LDB2O43679 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
LDB2O43679 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17■□□□□ 0.31
LDB2O43679 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC17■□□□□ 0.31
LDB2O43679 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 RPS2P28-201ENST00000314255 741 ntBASIC17■□□□□ 0.31
LDB2O43679 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17■□□□□ 0.31
LDB2O43679 INIP-202ENST00000374236 874 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17■□□□□ 0.31
LDB2O43679 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17■□□□□ 0.31
LDB2O43679 IGHV3-65-201ENST00000523210 341 ntBASIC17■□□□□ 0.31
LDB2O43679 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
LDB2O43679 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17■□□□□ 0.31
LDB2O43679 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 MIR7706-201ENST00000613747 67 ntBASIC17■□□□□ 0.31
LDB2O43679 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC17■□□□□ 0.31
LDB2O43679 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC17■□□□□ 0.31
LDB2O43679 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 TOP3BP1-201ENST00000420768 1380 ntBASIC17■□□□□ 0.31
LDB2O43679 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17■□□□□ 0.31
LDB2O43679 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC17■□□□□ 0.31
LDB2O43679 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
LDB2O43679 LINC00895-201ENST00000629028 1637 ntBASIC16.99■□□□□ 0.31
LDB2O43679 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
LDB2O43679 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB2O43679 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
LDB2O43679 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC16.99■□□□□ 0.31
LDB2O43679 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC16.99■□□□□ 0.31
LDB2O43679 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
LDB2O43679 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
LDB2O43679 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms