Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 FGFR3P6-201ENST00000457012 610 ntBASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SKP2-204ENST00000508514 821 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 AL139424.1-201ENST00000607572 797 ntBASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS9D1Q9Y2B5 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AL590787.1-201ENST00000568856 1315 ntBASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AC106886.4-201ENST00000623557 2502 ntBASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 SEC63P1-201ENST00000425785 1258 ntBASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS9D1Q9Y2B5 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 TBCB-205ENST00000585746 875 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 MTDHP4-201ENST00000600287 670 ntBASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 AL031670.1-201ENST00000619343 669 ntTSL 3 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.96■□□□□ 0.31
VPS9D1Q9Y2B5 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms