Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 IGHV3-52-201ENST00000519770 353 ntBASIC16.64■□□□□ 0.25
VPS13AQ96RL7 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 PDIA3P1-201ENST00000471856 1510 ntBASIC16.64■□□□□ 0.25
VPS13AQ96RL7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
VPS13AQ96RL7 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 KRT223P-202ENST00000449164 1292 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AL031055.1-201ENST00000606362 631 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 SLC25A24-204ENST00000569674 2357 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 STK4-201ENST00000372801 2038 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AC087499.6-201ENST00000411576 835 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AC011495.1-201ENST00000498085 584 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 USP32P1-208ENST00000506594 1164 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AC093503.3-201ENST00000624917 2352 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 MYCLP2-201ENST00000449268 967 ntBASIC16.63■□□□□ 0.25
VPS13AQ96RL7 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VPS13AQ96RL7 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 AC092506.1-202ENST00000401022 528 ntBASIC16.62■□□□□ 0.25
VPS13AQ96RL7 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VPS13AQ96RL7 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 COG4-212ENST00000564653 590 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VPS13AQ96RL7 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms