Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.06■□□□□ 0.8
BRF1Q92994 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
BRF1Q92994 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.06■□□□□ 0.8
BRF1Q92994 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.06■□□□□ 0.8
BRF1Q92994 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.06■□□□□ 0.8
BRF1Q92994 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
BRF1Q92994 UBALD1-205ENST00000590891 2641 ntBASIC20.06■□□□□ 0.8
BRF1Q92994 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
BRF1Q92994 AL118508.1-201ENST00000613502 2345 ntBASIC20.05■□□□□ 0.8
BRF1Q92994 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.05■□□□□ 0.8
BRF1Q92994 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 AL645728.1-201ENST00000366221 2101 ntBASIC20.05■□□□□ 0.8
BRF1Q92994 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC20.05■□□□□ 0.8
BRF1Q92994 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC20.05■□□□□ 0.8
BRF1Q92994 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
BRF1Q92994 FAM197Y8-203ENST00000450145 560 ntBASIC20.05■□□□□ 0.8
BRF1Q92994 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
BRF1Q92994 AC073648.2-201ENST00000510116 352 ntBASIC20.05■□□□□ 0.8
BRF1Q92994 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
BRF1Q92994 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC20.05■□□□□ 0.8
BRF1Q92994 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
BRF1Q92994 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
BRF1Q92994 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
BRF1Q92994 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC20.04■□□□□ 0.8
BRF1Q92994 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
BRF1Q92994 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
BRF1Q92994 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 PCDHA14-201ENST00000506751 2298 ntBASIC20.04■□□□□ 0.8
BRF1Q92994 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.04■□□□□ 0.8
BRF1Q92994 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.04■□□□□ 0.8
BRF1Q92994 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 HNRNPDP1-201ENST00000439535 754 ntBASIC20.04■□□□□ 0.8
BRF1Q92994 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 OR7E14P-202ENST00000530490 1290 ntBASIC20.04■□□□□ 0.8
BRF1Q92994 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC20.04■□□□□ 0.8
BRF1Q92994 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
BRF1Q92994 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC20.04■□□□□ 0.8
BRF1Q92994 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 FOS-208ENST00000555686 1496 ntTSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
BRF1Q92994 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC20.04■□□□□ 0.8
BRF1Q92994 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 TUBB8P12-201ENST00000308911 1335 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 TUBB7P-202ENST00000428444 1305 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 TUBB8P7-204ENST00000567960 1332 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.03■□□□□ 0.8
BRF1Q92994 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.03■□□□□ 0.8
BRF1Q92994 AC018712.1-201ENST00000455767 687 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC20.03■□□□□ 0.8
BRF1Q92994 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
BRF1Q92994 AL031008.1-201ENST00000619963 541 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 AC148477.8-201ENST00000624298 468 ntBASIC20.03■□□□□ 0.8
BRF1Q92994 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.03■□□□□ 0.8
BRF1Q92994 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms