Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CCS-201ENST00000310190 942 ntTSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 AL590326.2-201ENST00000625139 305 ntBASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 AC008741.2-201ENST00000612792 3115 ntBASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 GPR89P-201ENST00000407924 1495 ntBASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.41■□□□□ 0.22
CLHC1Q8NHS4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 PCDHB17P-201ENST00000539533 2393 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 IGHV3-47-201ENST00000425060 335 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 MIR3180-1-201ENST00000580374 94 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 MIR3180-3-201ENST00000584616 94 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 PKD1P5-201ENST00000532415 10291 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 AL603756.1-201ENST00000606511 2163 ntBASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC16.4■□□□□ 0.22
CLHC1Q8NHS4 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC16.39■□□□□ 0.22
CLHC1Q8NHS4 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC16.39■□□□□ 0.21
CLHC1Q8NHS4 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms