Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 ANKRD19P-201ENST00000338192 862 ntBASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 APOC3-202ENST00000375345 604 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 MTND6P24-201ENST00000440466 518 ntBASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 MTRF1LP2-201ENST00000506027 1122 ntBASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TECR-220ENST00000600083 1204 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 AL031055.1-201ENST00000606362 631 ntBASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 NARF-206ENST00000457415 1668 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SMC1BQ8NDV3 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 RNU1-129P-201ENST00000384064 167 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 RASL12-203ENST00000434605 982 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 CROCCP4-201ENST00000457096 498 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC099548.2-209ENST00000480264 625 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 U1.21-201ENST00000580816 167 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AL139099.5-201ENST00000635274 300 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 AC093484.2-201ENST00000580996 2166 ntBASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
SMC1BQ8NDV3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 AC090340.1-201ENST00000620778 4980 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 MYCLP2-201ENST00000449268 967 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 RHOQP1-201ENST00000555758 579 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 MIR3909-201ENST00000579518 119 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 AC004790.1-201ENST00000612686 536 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 MIR6727-201ENST00000620702 65 ntBASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.04■□□□□ 0.8
SMC1BQ8NDV3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms