Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 GPAT2P1-201ENST00000444924 1672 ntBASIC14.3□□□□□ -0.12
CCDC28AQ8IWP9 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 MYC-209ENST00000641252 345 ntBASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 BAK1-201ENST00000360661 2132 ntTSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 LINC00528-201ENST00000600723 2160 ntBASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CCDC28AQ8IWP9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.28□□□□□ -0.12
CCDC28AQ8IWP9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms