Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KRT18P34-201ENST00000488218 1270 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.83■□□□□ 0.28
CXCL12P48061 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 AC138969.3-201ENST00000546612 1459 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 AC138932.2-201ENST00000548268 1459 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 AC126755.4-201ENST00000549796 1459 ntBASIC16.83■□□□□ 0.28
CXCL12P48061 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.83■□□□□ 0.28
CXCL12P48061 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
CXCL12P48061 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CXCL12P48061 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.82■□□□□ 0.28
CXCL12P48061 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.82■□□□□ 0.28
CXCL12P48061 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
CXCL12P48061 AC087499.5-201ENST00000452760 1342 ntBASIC16.82■□□□□ 0.28
CXCL12P48061 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.82■□□□□ 0.28
CXCL12P48061 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.82■□□□□ 0.28
CXCL12P48061 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 AC073389.1-201ENST00000595595 795 ntBASIC16.82■□□□□ 0.28
CXCL12P48061 AL132655.2-201ENST00000596276 594 ntBASIC16.82■□□□□ 0.28
CXCL12P48061 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CXCL12P48061 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.82■□□□□ 0.28
CXCL12P48061 HR-201ENST00000312841 5351 ntTSL 5 BASIC16.82■□□□□ 0.28
CXCL12P48061 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.81■□□□□ 0.28
CXCL12P48061 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.81■□□□□ 0.28
CXCL12P48061 AL353705.2-201ENST00000428243 662 ntBASIC16.81■□□□□ 0.28
CXCL12P48061 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 AC140912.1-201ENST00000577171 1054 ntBASIC16.81■□□□□ 0.28
CXCL12P48061 MPDU1-223ENST00000582151 728 ntBASIC16.81■□□□□ 0.28
CXCL12P48061 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.81■□□□□ 0.28
CXCL12P48061 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.81■□□□□ 0.28
CXCL12P48061 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CXCL12P48061 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC16.81■□□□□ 0.28
CXCL12P48061 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CXCL12P48061 AC090164.3-201ENST00000610780 2143 ntBASIC16.81■□□□□ 0.28
CXCL12P48061 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
CXCL12P48061 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CXCL12P48061 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
CXCL12P48061 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CXCL12P48061 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CXCL12P48061 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms