Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.83■□□□□ 0.76
SCN4AP35499 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SCN4AP35499 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 GOLGA2P9-201ENST00000596977 1937 ntBASIC19.82■□□□□ 0.76
SCN4AP35499 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC19.82■□□□□ 0.76
SCN4AP35499 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC19.82■□□□□ 0.76
SCN4AP35499 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC19.82■□□□□ 0.76
SCN4AP35499 AC092337.1-201ENST00000568699 1129 ntBASIC19.82■□□□□ 0.76
SCN4AP35499 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 FOS-208ENST00000555686 1496 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 AC018665.1-201ENST00000622927 1362 ntBASIC19.82■□□□□ 0.76
SCN4AP35499 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC19.82■□□□□ 0.76
SCN4AP35499 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SCN4AP35499 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC19.82■□□□□ 0.76
SCN4AP35499 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SCN4AP35499 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 SLC25A1P3-201ENST00000395415 828 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 MEP1AP4-201ENST00000423244 1087 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC19.81■□□□□ 0.76
SCN4AP35499 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 AC244093.1-201ENST00000610837 814 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 TEX48-202ENST00000612244 662 ntTSL 3 BASIC19.81■□□□□ 0.76
SCN4AP35499 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 NOC2LP1-202ENST00000452600 2235 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC19.81■□□□□ 0.76
SCN4AP35499 AL583810.1-201ENST00000553344 1045 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.81■□□□□ 0.76
SCN4AP35499 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SCN4AP35499 RPSAP52-203ENST00000622976 1023 ntBASIC19.81■□□□□ 0.76
SCN4AP35499 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC19.81■□□□□ 0.76
SCN4AP35499 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SCN4AP35499 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN4AP35499 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SCN4AP35499 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SCN4AP35499 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC19.8■□□□□ 0.76
SCN4AP35499 AL589987.1-201ENST00000453380 819 ntBASIC19.8■□□□□ 0.76
SCN4AP35499 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SCN4AP35499 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC19.8■□□□□ 0.76
SCN4AP35499 RPS24-214ENST00000613865 538 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN4AP35499 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC19.8■□□□□ 0.76
SCN4AP35499 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SCN4AP35499 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.8■□□□□ 0.76
SCN4AP35499 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC19.8■□□□□ 0.76
SCN4AP35499 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC19.79■□□□□ 0.76
SCN4AP35499 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SCN4AP35499 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SCN4AP35499 MIR1247-201ENST00000408206 136 ntBASIC19.79■□□□□ 0.76
SCN4AP35499 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
SCN4AP35499 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC19.79■□□□□ 0.76
SCN4AP35499 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC19.79■□□□□ 0.76
SCN4AP35499 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC19.79■□□□□ 0.76
SCN4AP35499 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms