Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.28■□□□□ 0.36
RPA3P35244 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.28■□□□□ 0.36
RPA3P35244 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
RPA3P35244 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 COX5BP2-201ENST00000392354 334 ntBASIC17.27■□□□□ 0.36
RPA3P35244 DRAXINP1-201ENST00000437611 948 ntBASIC17.27■□□□□ 0.36
RPA3P35244 TOB2P1-201ENST00000469761 992 ntBASIC17.27■□□□□ 0.36
RPA3P35244 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 CIB2-208ENST00000560618 804 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 TPSP2-201ENST00000561760 610 ntBASIC17.27■□□□□ 0.36
RPA3P35244 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.27■□□□□ 0.36
RPA3P35244 AC092329.2-201ENST00000598402 547 ntBASIC17.27■□□□□ 0.36
RPA3P35244 Z69720.1-201ENST00000601483 472 ntBASIC17.27■□□□□ 0.36
RPA3P35244 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC17.27■□□□□ 0.36
RPA3P35244 NPAP1P7-201ENST00000613027 823 ntBASIC17.27■□□□□ 0.36
RPA3P35244 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
RPA3P35244 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
RPA3P35244 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.27■□□□□ 0.35
RPA3P35244 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC17.27■□□□□ 0.35
RPA3P35244 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.27■□□□□ 0.35
RPA3P35244 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.27■□□□□ 0.35
RPA3P35244 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC17.27■□□□□ 0.35
RPA3P35244 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
RPA3P35244 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
RPA3P35244 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.26■□□□□ 0.35
RPA3P35244 AC246785.2-201ENST00000432512 513 ntBASIC17.26■□□□□ 0.35
RPA3P35244 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.26■□□□□ 0.35
RPA3P35244 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 ABR-204ENST00000543210 1049 ntTSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 ABR-217ENST00000572441 563 ntTSL 4 BASIC17.26■□□□□ 0.35
RPA3P35244 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.26■□□□□ 0.35
RPA3P35244 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.26■□□□□ 0.35
RPA3P35244 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC17.26■□□□□ 0.35
RPA3P35244 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.26■□□□□ 0.35
RPA3P35244 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RPA3P35244 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
RPA3P35244 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPA3P35244 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPA3P35244 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.25■□□□□ 0.35
RPA3P35244 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RPA3P35244 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC17.25■□□□□ 0.35
RPA3P35244 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC17.25■□□□□ 0.35
RPA3P35244 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC17.25■□□□□ 0.35
RPA3P35244 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RPA3P35244 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RPA3P35244 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms