Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC15.71■□□□□ 0.11
ABCD3P28288 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCD3P28288 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCD3P28288 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.71■□□□□ 0.11
ABCD3P28288 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.11
ABCD3P28288 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC15.71■□□□□ 0.11
ABCD3P28288 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.71■□□□□ 0.11
ABCD3P28288 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ABCD3P28288 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
ABCD3P28288 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.71■□□□□ 0.1
ABCD3P28288 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC15.71■□□□□ 0.1
ABCD3P28288 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.71■□□□□ 0.1
ABCD3P28288 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.71■□□□□ 0.1
ABCD3P28288 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC15.71■□□□□ 0.1
ABCD3P28288 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.71■□□□□ 0.1
ABCD3P28288 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.1
ABCD3P28288 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC15.71■□□□□ 0.1
ABCD3P28288 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCD3P28288 AC060834.1-201ENST00000443027 2032 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 AC092068.3-201ENST00000587894 2016 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 LBH-204ENST00000406087 559 ntTSL 4 BASIC15.7■□□□□ 0.1
ABCD3P28288 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
ABCD3P28288 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC15.7■□□□□ 0.1
ABCD3P28288 SLC25A6P2-201ENST00000497974 877 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.7■□□□□ 0.1
ABCD3P28288 OR7E47P-204ENST00000575924 449 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCD3P28288 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCD3P28288 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.7■□□□□ 0.1
ABCD3P28288 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 AC002310.6-201ENST00000624451 1377 ntBASIC15.7■□□□□ 0.1
ABCD3P28288 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
ABCD3P28288 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ABCD3P28288 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 AC124067.4-201ENST00000519691 2379 ntBASIC15.69■□□□□ 0.1
ABCD3P28288 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC15.69■□□□□ 0.1
ABCD3P28288 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
ABCD3P28288 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ABCD3P28288 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
ABCD3P28288 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.69■□□□□ 0.1
ABCD3P28288 CRYGEP-201ENST00000412192 528 ntBASIC15.69■□□□□ 0.1
ABCD3P28288 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 VN2R19P-201ENST00000442399 1052 ntBASIC15.69■□□□□ 0.1
ABCD3P28288 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.69■□□□□ 0.1
ABCD3P28288 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.69■□□□□ 0.1
ABCD3P28288 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.69■□□□□ 0.1
ABCD3P28288 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC15.69■□□□□ 0.1
ABCD3P28288 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ABCD3P28288 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCD3P28288 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCD3P28288 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCD3P28288 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCD3P28288 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCD3P28288 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.68■□□□□ 0.1
ABCD3P28288 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCD3P28288 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCD3P28288 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.68■□□□□ 0.1
ABCD3P28288 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ABCD3P28288 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC15.68■□□□□ 0.1
ABCD3P28288 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
ABCD3P28288 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms