Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.65■□□□□ 0.58
COL6A1P12109 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A1P12109 AC132938.2-201ENST00000579188 680 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC18.65■□□□□ 0.58
COL6A1P12109 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC18.65■□□□□ 0.58
COL6A1P12109 AL591163.1-201ENST00000641757 987 ntBASIC18.65■□□□□ 0.58
COL6A1P12109 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
COL6A1P12109 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A1P12109 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A1P12109 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL6A1P12109 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC18.65■□□□□ 0.58
COL6A1P12109 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL6A1P12109 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.64■□□□□ 0.58
COL6A1P12109 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
COL6A1P12109 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
COL6A1P12109 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.64■□□□□ 0.57
COL6A1P12109 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.64■□□□□ 0.57
COL6A1P12109 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC18.64■□□□□ 0.57
COL6A1P12109 AC091167.2-201ENST00000579581 588 ntBASIC18.64■□□□□ 0.57
COL6A1P12109 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 AL035456.1-201ENST00000456064 1369 ntBASIC18.64■□□□□ 0.57
COL6A1P12109 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
COL6A1P12109 ABALON-201ENST00000629058 1903 ntBASIC18.64■□□□□ 0.57
COL6A1P12109 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL6A1P12109 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL6A1P12109 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A1P12109 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A1P12109 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A1P12109 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A1P12109 AP006294.1-201ENST00000415407 339 ntBASIC18.63■□□□□ 0.57
COL6A1P12109 AC112492.5-201ENST00000421897 457 ntBASIC18.63■□□□□ 0.57
COL6A1P12109 DFFBP1-201ENST00000433250 979 ntBASIC18.63■□□□□ 0.57
COL6A1P12109 SLC25A6P5-201ENST00000435663 894 ntBASIC18.63■□□□□ 0.57
COL6A1P12109 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC18.63■□□□□ 0.57
COL6A1P12109 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC18.63■□□□□ 0.57
COL6A1P12109 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A1P12109 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
COL6A1P12109 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A1P12109 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC18.63■□□□□ 0.57
COL6A1P12109 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.63■□□□□ 0.57
COL6A1P12109 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL6A1P12109 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A1P12109 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A1P12109 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A1P12109 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 RN7SL752P-201ENST00000463779 287 ntBASIC18.62■□□□□ 0.57
COL6A1P12109 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC18.62■□□□□ 0.57
COL6A1P12109 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.62■□□□□ 0.57
COL6A1P12109 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL6A1P12109 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.62■□□□□ 0.57
COL6A1P12109 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms