Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 SAPCD2P3-201ENST00000455031 850 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 BX005266.1-201ENST00000473402 457 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.38■□□□□ 0.21
SEMA3DO95025 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.38■□□□□ 0.21
SEMA3DO95025 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
SEMA3DO95025 NKAPP1-205ENST00000585790 367 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 CLEC4GP1-201ENST00000596555 870 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 AC008608.2-201ENST00000606089 416 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 AL353135.1-201ENST00000606729 504 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 AL589182.2-201ENST00000619332 1049 ntBASIC16.38■□□□□ 0.21
SEMA3DO95025 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
SEMA3DO95025 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.38■□□□□ 0.21
SEMA3DO95025 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SEMA3DO95025 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.37■□□□□ 0.21
SEMA3DO95025 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.37■□□□□ 0.21
SEMA3DO95025 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 FGFR3P6-201ENST00000457012 610 ntBASIC16.37■□□□□ 0.21
SEMA3DO95025 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC16.37■□□□□ 0.21
SEMA3DO95025 SCARNA2-201ENST00000458748 420 ntBASIC16.37■□□□□ 0.21
SEMA3DO95025 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.37■□□□□ 0.21
SEMA3DO95025 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SEMA3DO95025 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.37■□□□□ 0.21
SEMA3DO95025 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SEMA3DO95025 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SEMA3DO95025 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.37■□□□□ 0.21
SEMA3DO95025 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SEMA3DO95025 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.36■□□□□ 0.21
SEMA3DO95025 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.36■□□□□ 0.21
SEMA3DO95025 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.36■□□□□ 0.21
SEMA3DO95025 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.36■□□□□ 0.21
SEMA3DO95025 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SEMA3DO95025 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SEMA3DO95025 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SEMA3DO95025 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms