Protein–RNA interactions for Protein: Q99453

PHOX2B, Paired mesoderm homeobox protein 2B, humanhuman

Predictions only

Length 314 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHOX2BQ99453 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SPDYE7P-202ENST00000420373 878 ntBASIC17.25■□□□□ 0.35
PHOX2BQ99453 AC103564.2-201ENST00000432853 1299 ntBASIC17.25■□□□□ 0.35
PHOX2BQ99453 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SPCS2P4-201ENST00000436160 681 ntBASIC17.25■□□□□ 0.35
PHOX2BQ99453 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 USB1-203ENST00000539737 1212 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC17.25■□□□□ 0.35
PHOX2BQ99453 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
PHOX2BQ99453 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 AC092933.1-201ENST00000393644 945 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 TSSK5P-201ENST00000423978 907 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 RN7SL589P-201ENST00000481268 310 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 RAB43P1-201ENST00000561790 589 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 RN7SL275P-201ENST00000582762 335 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 ACTL9-202ENST00000612068 1252 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 MIR6787-201ENST00000616675 61 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
PHOX2BQ99453 PI4KAP1-204ENST00000612579 1703 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.24■□□□□ 0.35
PHOX2BQ99453 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
PHOX2BQ99453 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
PHOX2BQ99453 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.23■□□□□ 0.35
PHOX2BQ99453 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PHOX2BQ99453 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms