Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 RCN1P2-201ENST00000398357 915 ntBASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 DRAXINP1-201ENST00000437611 948 ntBASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 AC124947.2-201ENST00000547118 1133 ntBASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PCDH8P1-201ENST00000428983 2773 ntBASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLHC1Q8NHS4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 INTS4P1-201ENST00000438455 1935 ntBASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 FAM210CP-201ENST00000445714 574 ntBASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 CDV3-207ENST00000508481 661 ntTSL 3 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 AC074051.2-201ENST00000565115 352 ntBASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 AC148477.5-201ENST00000625164 1645 ntBASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 FRMD8P1-201ENST00000440433 1524 ntBASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.43■□□□□ 0.22
CLHC1Q8NHS4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 FUOM-202ENST00000368551 628 ntTSL 3 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AP000867.3-201ENST00000524675 377 ntBASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 AL662844.4-201ENST00000606367 2838 ntBASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.42■□□□□ 0.22
CLHC1Q8NHS4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms