Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 AL513210.1-201ENST00000629608 234 ntBASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 AC134043.2-201ENST00000624206 2238 ntBASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
HDDC3Q8N4P3 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.08■□□□□ 0.33
HDDC3Q8N4P3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
HDDC3Q8N4P3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
HDDC3Q8N4P3 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 AC112191.1-201ENST00000523689 701 ntBASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 MIR4745-201ENST00000577608 62 ntBASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
HDDC3Q8N4P3 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC016396.2-201ENST00000562575 1417 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 HLA-DRB6-201ENST00000411500 1235 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC004461.1-201ENST00000412461 403 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC023141.5-201ENST00000458585 616 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC190387.1-201ENST00000551683 408 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AC138761.1-201ENST00000584393 385 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 REXO1L3P-201ENST00000622202 1288 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AL645728.2-201ENST00000641974 660 ntBASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
HDDC3Q8N4P3 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms