Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 AP001005.1-201ENST00000571755 1248 ntBASIC20.63■□□□□ 0.89
VPS53Q5VIR6 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS53Q5VIR6 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 CSF3-203ENST00000394148 622 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 ARTN-206ENST00000472435 402 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AL662844.1-201ENST00000546340 181 ntBASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AC116407.3-201ENST00000623905 1129 ntBASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS53Q5VIR6 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AC079776.4-201ENST00000511039 504 ntBASIC20.61■□□□□ 0.89
VPS53Q5VIR6 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.61■□□□□ 0.89
VPS53Q5VIR6 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AC099398.1-201ENST00000567919 2776 ntBASIC20.61■□□□□ 0.89
VPS53Q5VIR6 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS53Q5VIR6 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 EGFEM1P-202ENST00000431685 1563 ntBASIC20.6■□□□□ 0.89
VPS53Q5VIR6 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 PTCHD3P3-201ENST00000403073 906 ntBASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 AC092910.1-201ENST00000482027 1129 ntBASIC20.6■□□□□ 0.89
VPS53Q5VIR6 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 AC105339.3-201ENST00000560043 636 ntBASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms