Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.78■□□□□ 0.44
CDH6P55285 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CDH6P55285 AL353135.1-201ENST00000606729 504 ntBASIC17.78■□□□□ 0.44
CDH6P55285 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CDH6P55285 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 FLJ38576-201ENST00000623820 2459 ntBASIC17.78■□□□□ 0.44
CDH6P55285 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC17.78■□□□□ 0.44
CDH6P55285 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.78■□□□□ 0.44
CDH6P55285 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CDH6P55285 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC17.78■□□□□ 0.44
CDH6P55285 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC17.77■□□□□ 0.44
CDH6P55285 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
CDH6P55285 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.77■□□□□ 0.44
CDH6P55285 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.77■□□□□ 0.44
CDH6P55285 DUSP5P1-201ENST00000441325 1139 ntBASIC17.77■□□□□ 0.44
CDH6P55285 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.77■□□□□ 0.44
CDH6P55285 IFNL4P1-201ENST00000607083 540 ntBASIC17.77■□□□□ 0.44
CDH6P55285 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CDH6P55285 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CDH6P55285 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC17.77■□□□□ 0.44
CDH6P55285 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDH6P55285 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CDH6P55285 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDH6P55285 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CDH6P55285 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CDH6P55285 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDH6P55285 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CDH6P55285 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.76■□□□□ 0.43
CDH6P55285 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 AL590787.1-201ENST00000568856 1315 ntBASIC17.76■□□□□ 0.43
CDH6P55285 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CDH6P55285 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.76■□□□□ 0.43
CDH6P55285 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC17.76■□□□□ 0.43
CDH6P55285 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC17.76■□□□□ 0.43
CDH6P55285 SAPCD2P3-201ENST00000455031 850 ntBASIC17.76■□□□□ 0.43
CDH6P55285 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC17.76■□□□□ 0.43
CDH6P55285 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.76■□□□□ 0.43
CDH6P55285 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.76■□□□□ 0.43
CDH6P55285 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC17.76■□□□□ 0.43
CDH6P55285 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC17.76■□□□□ 0.43
CDH6P55285 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CDH6P55285 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 AC078925.2-201ENST00000624013 1973 ntBASIC17.75■□□□□ 0.43
CDH6P55285 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CDH6P55285 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC17.75■□□□□ 0.43
CDH6P55285 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CDH6P55285 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CDH6P55285 AF238378.1-201ENST00000526806 358 ntBASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms