Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
RFC3P40938 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.66■□□□□ 0.1
RFC3P40938 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.66■□□□□ 0.1
RFC3P40938 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.66■□□□□ 0.1
RFC3P40938 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.66■□□□□ 0.1
RFC3P40938 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.66■□□□□ 0.1
RFC3P40938 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 GGTLC5P-201ENST00000617623 998 ntBASIC15.66■□□□□ 0.1
RFC3P40938 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.66■□□□□ 0.1
RFC3P40938 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 MST1L-201ENST00000442552 2185 ntBASIC15.66■□□□□ 0.1
RFC3P40938 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
RFC3P40938 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.66■□□□□ 0.1
RFC3P40938 BCAR1-209ENST00000546196 1340 ntBASIC15.66■□□□□ 0.1
RFC3P40938 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 AC002310.6-201ENST00000624451 1377 ntBASIC15.65■□□□□ 0.1
RFC3P40938 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 NABP1-203ENST00000409510 843 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.65■□□□□ 0.1
RFC3P40938 AC004967.1-201ENST00000453589 447 ntBASIC15.65■□□□□ 0.1
RFC3P40938 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.65■□□□□ 0.1
RFC3P40938 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 AC004877.2-201ENST00000623941 599 ntBASIC15.65■□□□□ 0.1
RFC3P40938 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
RFC3P40938 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
RFC3P40938 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
RFC3P40938 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 PCDHA12-202ENST00000613593 2588 ntBASIC15.65■□□□□ 0.1
RFC3P40938 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.65■□□□□ 0.1
RFC3P40938 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
RFC3P40938 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
RFC3P40938 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
RFC3P40938 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.1
RFC3P40938 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
RFC3P40938 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC15.64■□□□□ 0.09
RFC3P40938 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC15.64■□□□□ 0.09
RFC3P40938 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
RFC3P40938 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
RFC3P40938 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC15.64■□□□□ 0.09
RFC3P40938 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
RFC3P40938 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC15.64■□□□□ 0.09
RFC3P40938 AL596442.2-201ENST00000610240 980 ntBASIC15.64■□□□□ 0.09
RFC3P40938 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
RFC3P40938 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
RFC3P40938 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms