Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA9P31269 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HOXA9P31269 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXA9P31269 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 MIR346-201ENST00000362234 95 ntBASIC17.67■□□□□ 0.42
HOXA9P31269 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC17.67■□□□□ 0.42
HOXA9P31269 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HOXA9P31269 PRR29-209ENST00000582540 967 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 AL158211.3-201ENST00000607385 239 ntBASIC17.67■□□□□ 0.42
HOXA9P31269 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
HOXA9P31269 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXA9P31269 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
HOXA9P31269 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXA9P31269 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HOXA9P31269 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXA9P31269 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.66■□□□□ 0.42
HOXA9P31269 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 CFL1-212ENST00000531413 636 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXA9P31269 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 AP000842.3-202ENST00000569238 1080 ntBASIC17.66■□□□□ 0.42
HOXA9P31269 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.66■□□□□ 0.42
HOXA9P31269 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
HOXA9P31269 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.66■□□□□ 0.42
HOXA9P31269 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 AC008677.1-201ENST00000519230 1561 ntBASIC17.66■□□□□ 0.42
HOXA9P31269 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
HOXA9P31269 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HOXA9P31269 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
HOXA9P31269 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.65■□□□□ 0.42
HOXA9P31269 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA9P31269 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXA9P31269 LTB4R2-202ENST00000528054 3092 ntBASIC17.65■□□□□ 0.42
HOXA9P31269 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA9P31269 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA9P31269 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXA9P31269 SLC25A39P2-201ENST00000537614 270 ntBASIC17.65■□□□□ 0.42
HOXA9P31269 AC190387.1-201ENST00000551683 408 ntBASIC17.65■□□□□ 0.42
HOXA9P31269 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXA9P31269 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC17.65■□□□□ 0.42
HOXA9P31269 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.65■□□□□ 0.42
HOXA9P31269 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.65■□□□□ 0.42
HOXA9P31269 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.65■□□□□ 0.42
HOXA9P31269 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HOXA9P31269 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA9P31269 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HOXA9P31269 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC17.64■□□□□ 0.41
HOXA9P31269 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
HOXA9P31269 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms