Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.53■□□□□ 0.24
CLDN9O95484 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.53■□□□□ 0.24
CLDN9O95484 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.53■□□□□ 0.24
CLDN9O95484 RBM17P3-201ENST00000417687 1192 ntBASIC16.53■□□□□ 0.24
CLDN9O95484 HCG4P8-203ENST00000443049 980 ntBASIC16.53■□□□□ 0.24
CLDN9O95484 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC16.53■□□□□ 0.24
CLDN9O95484 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.53■□□□□ 0.24
CLDN9O95484 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.53■□□□□ 0.24
CLDN9O95484 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC16.53■□□□□ 0.24
CLDN9O95484 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC16.53■□□□□ 0.24
CLDN9O95484 PCDHB17P-201ENST00000539533 2393 ntBASIC16.53■□□□□ 0.24
CLDN9O95484 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.53■□□□□ 0.24
CLDN9O95484 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CLDN9O95484 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.53■□□□□ 0.24
CLDN9O95484 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC16.53■□□□□ 0.24
CLDN9O95484 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.53■□□□□ 0.24
CLDN9O95484 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLDN9O95484 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.52■□□□□ 0.24
CLDN9O95484 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 BX005266.1-201ENST00000473402 457 ntBASIC16.52■□□□□ 0.24
CLDN9O95484 AL732292.2-201ENST00000609649 430 ntBASIC16.52■□□□□ 0.24
CLDN9O95484 AL121772.3-201ENST00000610840 674 ntBASIC16.52■□□□□ 0.24
CLDN9O95484 AL022326.1-202ENST00000641533 845 ntBASIC16.52■□□□□ 0.24
CLDN9O95484 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
CLDN9O95484 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
CLDN9O95484 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC16.52■□□□□ 0.23
CLDN9O95484 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CLDN9O95484 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CLDN9O95484 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.51■□□□□ 0.23
CLDN9O95484 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 NKAPP1-205ENST00000585790 367 ntBASIC16.51■□□□□ 0.23
CLDN9O95484 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 AL139288.1-201ENST00000623748 933 ntBASIC16.51■□□□□ 0.23
CLDN9O95484 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 NCF1C-201ENST00000438382 1427 ntBASIC16.51■□□□□ 0.23
CLDN9O95484 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC16.51■□□□□ 0.23
CLDN9O95484 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.51■□□□□ 0.23
CLDN9O95484 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CLDN9O95484 AL021920.2-201ENST00000624828 1351 ntBASIC16.51■□□□□ 0.23
CLDN9O95484 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN9O95484 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
CLDN9O95484 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms