Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 IFNL4P1-201ENST00000607083 540 ntBASIC18.28■□□□□ 0.52
FOXN3O00409 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.28■□□□□ 0.52
FOXN3O00409 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.28■□□□□ 0.52
FOXN3O00409 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
FOXN3O00409 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
FOXN3O00409 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 TUBB8P12-201ENST00000308911 1335 ntBASIC18.27■□□□□ 0.52
FOXN3O00409 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 TUBB7P-202ENST00000428444 1305 ntBASIC18.27■□□□□ 0.52
FOXN3O00409 TUBB8P7-204ENST00000567960 1332 ntBASIC18.27■□□□□ 0.52
FOXN3O00409 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
FOXN3O00409 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
FOXN3O00409 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
FOXN3O00409 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.27■□□□□ 0.52
FOXN3O00409 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
FOXN3O00409 AC004706.3-202ENST00000621574 984 ntBASIC18.27■□□□□ 0.52
FOXN3O00409 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
FOXN3O00409 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.27■□□□□ 0.52
FOXN3O00409 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN3O00409 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
FOXN3O00409 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN3O00409 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN3O00409 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.51
FOXN3O00409 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN3O00409 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC18.27■□□□□ 0.51
FOXN3O00409 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
FOXN3O00409 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
FOXN3O00409 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN3O00409 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN3O00409 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.26■□□□□ 0.51
FOXN3O00409 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC18.26■□□□□ 0.51
FOXN3O00409 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
FOXN3O00409 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN3O00409 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 SCARNA2-201ENST00000458748 420 ntBASIC18.26■□□□□ 0.51
FOXN3O00409 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC18.26■□□□□ 0.51
FOXN3O00409 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC18.26■□□□□ 0.51
FOXN3O00409 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
FOXN3O00409 FOS-208ENST00000555686 1496 ntTSL 2 BASIC18.26■□□□□ 0.51
FOXN3O00409 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
FOXN3O00409 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
FOXN3O00409 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
FOXN3O00409 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN3O00409 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC18.25■□□□□ 0.51
FOXN3O00409 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN3O00409 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN3O00409 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXN3O00409 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN3O00409 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.25■□□□□ 0.51
FOXN3O00409 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN3O00409 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC18.25■□□□□ 0.51
FOXN3O00409 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC18.25■□□□□ 0.51
FOXN3O00409 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
FOXN3O00409 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms