Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 KRT18P48-201ENST00000434763 852 ntBASIC15.66■□□□□ 0.1
CLN6Q9NWW5 TSPY15P-201ENST00000457163 923 ntBASIC15.66■□□□□ 0.1
CLN6Q9NWW5 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 MIR4497-201ENST00000583208 89 ntBASIC15.66■□□□□ 0.1
CLN6Q9NWW5 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 AC141257.4-201ENST00000634557 245 ntBASIC15.66■□□□□ 0.1
CLN6Q9NWW5 AC136944.6-201ENST00000634818 245 ntBASIC15.66■□□□□ 0.1
CLN6Q9NWW5 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
CLN6Q9NWW5 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 COX5BP2-201ENST00000392354 334 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 MTCL1P1-201ENST00000446207 792 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 AL136038.4-201ENST00000603606 1261 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 AL391807.1-203ENST00000604392 2365 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 EGFEM1P-202ENST00000431685 1563 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 AL596257.1-201ENST00000641463 2694 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 NORAD-201ENST00000565493 5339 ntBASIC15.65■□□□□ 0.1
CLN6Q9NWW5 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
CLN6Q9NWW5 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
CLN6Q9NWW5 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.1
CLN6Q9NWW5 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
CLN6Q9NWW5 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
CLN6Q9NWW5 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC15.64■□□□□ 0.09
CLN6Q9NWW5 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
CLN6Q9NWW5 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms