Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 ACTG1P4-201ENST00000425123 1122 ntBASIC17.63■□□□□ 0.41
USP29Q9HBJ7 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 TP73-AS1-207ENST00000624167 988 ntBASIC17.63■□□□□ 0.41
USP29Q9HBJ7 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USP29Q9HBJ7 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 AL031284.1-201ENST00000419297 478 ntBASIC17.62■□□□□ 0.41
USP29Q9HBJ7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 RNA5SP419-201ENST00000515908 135 ntBASIC17.62■□□□□ 0.41
USP29Q9HBJ7 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 AC008608.2-201ENST00000606089 416 ntBASIC17.62■□□□□ 0.41
USP29Q9HBJ7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
USP29Q9HBJ7 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AC079776.2-201ENST00000641154 1609 ntBASIC17.61■□□□□ 0.41
USP29Q9HBJ7 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.61■□□□□ 0.41
USP29Q9HBJ7 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 SCARNA2-201ENST00000458748 420 ntBASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 IL9RP2-201ENST00000423948 1312 ntBASIC17.61■□□□□ 0.41
USP29Q9HBJ7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AP005117.1-201ENST00000584346 1413 ntBASIC17.61■□□□□ 0.41
USP29Q9HBJ7 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
USP29Q9HBJ7 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms