Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC23.8■■□□□ 1.4
USP47Q96K76 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP47Q96K76 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP47Q96K76 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC23.8■■□□□ 1.4
USP47Q96K76 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC23.8■■□□□ 1.4
USP47Q96K76 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP47Q96K76 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
USP47Q96K76 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 AL513480.1-201ENST00000451731 511 ntBASIC23.79■■□□□ 1.4
USP47Q96K76 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC23.79■■□□□ 1.4
USP47Q96K76 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC23.79■■□□□ 1.4
USP47Q96K76 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC23.79■■□□□ 1.4
USP47Q96K76 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC23.79■■□□□ 1.4
USP47Q96K76 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC23.79■■□□□ 1.4
USP47Q96K76 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
USP47Q96K76 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
USP47Q96K76 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
USP47Q96K76 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
USP47Q96K76 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC23.79■■□□□ 1.4
USP47Q96K76 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC23.78■■□□□ 1.4
USP47Q96K76 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC23.78■■□□□ 1.4
USP47Q96K76 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC23.78■■□□□ 1.4
USP47Q96K76 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC23.78■■□□□ 1.4
USP47Q96K76 LINC00895-201ENST00000629028 1637 ntBASIC23.78■■□□□ 1.4
USP47Q96K76 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC23.78■■□□□ 1.4
USP47Q96K76 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC23.78■■□□□ 1.4
USP47Q96K76 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
USP47Q96K76 AC025580.3-201ENST00000617932 1424 ntBASIC23.78■■□□□ 1.4
USP47Q96K76 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
USP47Q96K76 AC002347.1-201ENST00000569543 541 ntBASIC23.78■■□□□ 1.4
USP47Q96K76 AC023141.13-201ENST00000604991 943 ntBASIC23.78■■□□□ 1.4
USP47Q96K76 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC23.78■■□□□ 1.4
USP47Q96K76 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
USP47Q96K76 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
USP47Q96K76 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
USP47Q96K76 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
USP47Q96K76 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 AC131009.4-201ENST00000624048 1740 ntBASIC23.77■■□□□ 1.4
USP47Q96K76 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
USP47Q96K76 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC23.77■■□□□ 1.4
USP47Q96K76 AC004832.2-201ENST00000426397 482 ntBASIC23.77■■□□□ 1.4
USP47Q96K76 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC23.77■■□□□ 1.4
USP47Q96K76 COX5A-206ENST00000568783 571 ntTSL 3 BASIC23.77■■□□□ 1.4
USP47Q96K76 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC23.77■■□□□ 1.4
USP47Q96K76 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
USP47Q96K76 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.39
USP47Q96K76 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC23.76■■□□□ 1.39
USP47Q96K76 AL645728.1-201ENST00000366221 2101 ntBASIC23.76■■□□□ 1.39
USP47Q96K76 AC092919.2-201ENST00000623631 1645 ntBASIC23.76■■□□□ 1.39
USP47Q96K76 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC23.76■■□□□ 1.39
USP47Q96K76 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC23.76■■□□□ 1.39
USP47Q96K76 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC23.76■■□□□ 1.39
USP47Q96K76 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
USP47Q96K76 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 FALEC-201ENST00000416894 566 ntTSL 3 BASIC23.76■■□□□ 1.39
USP47Q96K76 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC23.76■■□□□ 1.39
USP47Q96K76 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC23.76■■□□□ 1.39
USP47Q96K76 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC23.76■■□□□ 1.39
USP47Q96K76 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
USP47Q96K76 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC23.76■■□□□ 1.39
USP47Q96K76 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP47Q96K76 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP47Q96K76 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC23.75■■□□□ 1.39
USP47Q96K76 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
USP47Q96K76 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
USP47Q96K76 AC078925.2-201ENST00000624013 1973 ntBASIC23.75■■□□□ 1.39
USP47Q96K76 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms