Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TTC28Q96AY4 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.09■□□□□ 0.33
TTC28Q96AY4 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TTC28Q96AY4 AMT-250ENST00000637682 1823 ntTSL 5 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TTC28Q96AY4 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 AL589987.1-201ENST00000453380 819 ntBASIC17.08■□□□□ 0.33
TTC28Q96AY4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC17.08■□□□□ 0.33
TTC28Q96AY4 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 FLJ13224-201ENST00000313737 1514 ntBASIC17.08■□□□□ 0.32
TTC28Q96AY4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TTC28Q96AY4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 AC004898.1-201ENST00000451057 766 ntBASIC17.08■□□□□ 0.32
TTC28Q96AY4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.08■□□□□ 0.32
TTC28Q96AY4 AC105021.1-202ENST00000570572 669 ntBASIC17.08■□□□□ 0.32
TTC28Q96AY4 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 SERBP1P3-201ENST00000459980 809 ntBASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC104784.1-201ENST00000473096 294 ntBASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC17.07■□□□□ 0.32
TTC28Q96AY4 AC079316.1-201ENST00000548397 411 ntBASIC17.07■□□□□ 0.32
TTC28Q96AY4 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC17.07■□□□□ 0.32
TTC28Q96AY4 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TTC28Q96AY4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 AC046185.3-201ENST00000623228 1824 ntBASIC17.06■□□□□ 0.32
TTC28Q96AY4 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 AC005077.2-201ENST00000449786 690 ntBASIC17.06■□□□□ 0.32
TTC28Q96AY4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 KRT18P66-201ENST00000452970 1269 ntBASIC17.06■□□□□ 0.32
TTC28Q96AY4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 MIR5189-201ENST00000577370 114 ntBASIC17.06■□□□□ 0.32
TTC28Q96AY4 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.06■□□□□ 0.32
TTC28Q96AY4 PKD1P6-201ENST00000343738 4769 ntBASIC17.06■□□□□ 0.32
TTC28Q96AY4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TTC28Q96AY4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 68 ms