Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
DEPDC4Q8N2C3 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 AL391807.1-203ENST00000604392 2365 ntBASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 AL139327.4-201ENST00000612362 153 ntBASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 F11R-206ENST00000621309 4770 ntTSL 5 BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
DEPDC4Q8N2C3 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AC011498.5-201ENST00000592027 486 ntBASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AL121672.3-201ENST00000608644 468 ntBASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AC026691.1-201ENST00000602502 2017 ntBASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 PBK-203ENST00000522944 1499 ntTSL 2 BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
DEPDC4Q8N2C3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC15.96■□□□□ 0.15
DEPDC4Q8N2C3 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms