Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 HLA-J-202ENST00000469281 1241 ntBASIC21.13■□□□□ 0.97
SYNE4Q8N205 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 FRMD8P1-201ENST00000440433 1524 ntBASIC21.13■□□□□ 0.97
SYNE4Q8N205 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SYNE4Q8N205 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.13■□□□□ 0.97
SYNE4Q8N205 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 AC116353.5-201ENST00000638148 1699 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 MIR661-201ENST00000384842 89 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 GSAP-205ENST00000430584 600 ntTSL 5 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 BASP1P1-201ENST00000430708 665 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 RBPMS2P1-201ENST00000437762 623 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 AC002472.2-201ENST00000442739 958 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 CNN2P2-201ENST00000443536 909 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 TSPY16P-201ENST00000449843 468 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 CNN2P3-201ENST00000450201 906 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 RN7SL204P-201ENST00000582831 262 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 AL136317.3-201ENST00000618497 906 ntBASIC21.12■□□□□ 0.97
SYNE4Q8N205 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
SYNE4Q8N205 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SYNE4Q8N205 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 RNU1-129P-201ENST00000384064 167 ntBASIC21.11■□□□□ 0.97
SYNE4Q8N205 MIR943-201ENST00000401286 94 ntBASIC21.11■□□□□ 0.97
SYNE4Q8N205 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 RN7SL589P-201ENST00000481268 310 ntBASIC21.11■□□□□ 0.97
SYNE4Q8N205 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 NAA60-208ENST00000570819 833 ntTSL 2 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 U1.21-201ENST00000580816 167 ntBASIC21.11■□□□□ 0.97
SYNE4Q8N205 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 WT1-AS_2.1-201ENST00000613208 137 ntBASIC21.11■□□□□ 0.97
SYNE4Q8N205 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SYNE4Q8N205 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
SYNE4Q8N205 PP12613-201ENST00000424958 2230 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 TOP3BP1-201ENST00000420768 1380 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 AC008677.1-201ENST00000519230 1561 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 TUBB3P1-201ENST00000405796 1332 ntBASIC21.1■□□□□ 0.97
SYNE4Q8N205 BSG-215ENST00000618006 1329 ntTSL 2 BASIC21.1■□□□□ 0.97
SYNE4Q8N205 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SYNE4Q8N205 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms