Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 MIR943-201ENST00000401286 94 ntBASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 BASP1P1-201ENST00000430708 665 ntBASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 IGHV3-62-201ENST00000520057 340 ntBASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 AC109635.5-201ENST00000533593 962 ntBASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
NPAS3Q8IXF0 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC107890.1-201ENST00000422478 521 ntBASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC125807.1-201ENST00000483097 614 ntBASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.61■□□□□ 0.41
NPAS3Q8IXF0 NOC2LP2-201ENST00000407594 1944 ntBASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 AC012317.2-201ENST00000623305 2251 ntBASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
NPAS3Q8IXF0 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms