Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 CYB561-217ENST00000582997 877 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 STK25P1-201ENST00000585406 838 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AL589182.2-201ENST00000619332 1049 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC004790.2-201ENST00000623588 572 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 AC093525.9-201ENST00000624961 1746 ntBASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SH3RF1Q7Z6J0 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 TSEN15P1-201ENST00000423257 515 ntBASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 IGHV3-52-201ENST00000519770 353 ntBASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 AL096865.1-201ENST00000606796 927 ntBASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
SH3RF1Q7Z6J0 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC19.53■□□□□ 0.72
SH3RF1Q7Z6J0 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 IGLL3P-201ENST00000412472 434 ntBASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 IGHV3-65-201ENST00000523210 341 ntBASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AC093512.1-201ENST00000617969 520 ntBASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 AC073592.5-201ENST00000624854 528 ntBASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
SH3RF1Q7Z6J0 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms