Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.4■□□□□ 0.38
USP39Q53GS9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
USP39Q53GS9 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC17.4■□□□□ 0.38
USP39Q53GS9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP39Q53GS9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP39Q53GS9 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP39Q53GS9 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
USP39Q53GS9 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.39■□□□□ 0.37
USP39Q53GS9 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USP39Q53GS9 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.39■□□□□ 0.37
USP39Q53GS9 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC17.39■□□□□ 0.37
USP39Q53GS9 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USP39Q53GS9 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.39■□□□□ 0.37
USP39Q53GS9 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.39■□□□□ 0.37
USP39Q53GS9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.39■□□□□ 0.37
USP39Q53GS9 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.39■□□□□ 0.37
USP39Q53GS9 CXCL1P1-201ENST00000502804 216 ntBASIC17.39■□□□□ 0.37
USP39Q53GS9 SPCS2P1-201ENST00000561636 679 ntBASIC17.39■□□□□ 0.37
USP39Q53GS9 AC025678.2-201ENST00000562061 970 ntBASIC17.39■□□□□ 0.37
USP39Q53GS9 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.39■□□□□ 0.37
USP39Q53GS9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
USP39Q53GS9 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
USP39Q53GS9 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
USP39Q53GS9 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.39■□□□□ 0.37
USP39Q53GS9 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
USP39Q53GS9 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.39■□□□□ 0.37
USP39Q53GS9 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
USP39Q53GS9 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
USP39Q53GS9 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC17.38■□□□□ 0.37
USP39Q53GS9 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC17.38■□□□□ 0.37
USP39Q53GS9 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
USP39Q53GS9 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.38■□□□□ 0.37
USP39Q53GS9 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC17.38■□□□□ 0.37
USP39Q53GS9 AL513210.1-201ENST00000629608 234 ntBASIC17.38■□□□□ 0.37
USP39Q53GS9 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.38■□□□□ 0.37
USP39Q53GS9 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC17.38■□□□□ 0.37
USP39Q53GS9 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
USP39Q53GS9 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
USP39Q53GS9 AL139400.1-201ENST00000366220 510 ntBASIC17.37■□□□□ 0.37
USP39Q53GS9 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.37■□□□□ 0.37
USP39Q53GS9 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.37■□□□□ 0.37
USP39Q53GS9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.37■□□□□ 0.37
USP39Q53GS9 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.37■□□□□ 0.37
USP39Q53GS9 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
USP39Q53GS9 AC002558.1-201ENST00000488906 803 ntBASIC17.37■□□□□ 0.37
USP39Q53GS9 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC17.37■□□□□ 0.37
USP39Q53GS9 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC17.37■□□□□ 0.37
USP39Q53GS9 AC068137.2-201ENST00000605408 478 ntBASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms