Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 AC243591.1-201ENST00000452967 1364 ntBASIC15.29■□□□□ 0.04
H3F3AP84243 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.29■□□□□ 0.04
H3F3AP84243 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 AC093909.1-201ENST00000504731 1122 ntBASIC15.29■□□□□ 0.04
H3F3AP84243 IGHV3-65-201ENST00000523210 341 ntBASIC15.29■□□□□ 0.04
H3F3AP84243 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 DUX4L17-201ENST00000557360 1267 ntBASIC15.29■□□□□ 0.04
H3F3AP84243 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.29■□□□□ 0.04
H3F3AP84243 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
H3F3AP84243 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.29■□□□□ 0.04
H3F3AP84243 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
H3F3AP84243 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC15.29■□□□□ 0.04
H3F3AP84243 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 AC012313.1-201ENST00000593393 3059 ntBASIC15.28■□□□□ 0.04
H3F3AP84243 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 AC060834.1-201ENST00000443027 2032 ntBASIC15.28■□□□□ 0.04
H3F3AP84243 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.28■□□□□ 0.04
H3F3AP84243 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 IGHV3-22-201ENST00000520721 359 ntBASIC15.28■□□□□ 0.04
H3F3AP84243 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.28■□□□□ 0.04
H3F3AP84243 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 KLK8-205ENST00000593490 267 ntTSL 3 BASIC15.28■□□□□ 0.04
H3F3AP84243 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 GGTLC5P-201ENST00000617623 998 ntBASIC15.28■□□□□ 0.04
H3F3AP84243 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 BCL11B-202ENST00000357195 7559 ntAPPRIS P4 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.28■□□□□ 0.04
H3F3AP84243 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
H3F3AP84243 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.28■□□□□ 0.04
H3F3AP84243 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
H3F3AP84243 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
H3F3AP84243 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC15.27■□□□□ 0.04
H3F3AP84243 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.04
H3F3AP84243 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
H3F3AP84243 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
H3F3AP84243 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
H3F3AP84243 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms