Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC12.14□□□□□ -0.47
RPL39P62891 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC12.14□□□□□ -0.47
RPL39P62891 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
RPL39P62891 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 MDFI-202ENST00000373050 809 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
RPL39P62891 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 AL158047.1-201ENST00000445918 881 ntBASIC12.13□□□□□ -0.47
RPL39P62891 UBE2SP1-201ENST00000450587 669 ntBASIC12.13□□□□□ -0.47
RPL39P62891 FAM201B-201ENST00000458407 597 ntBASIC12.13□□□□□ -0.47
RPL39P62891 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC12.13□□□□□ -0.47
RPL39P62891 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC12.13□□□□□ -0.47
RPL39P62891 TEN1-204ENST00000588202 862 ntTSL 3 BASIC12.13□□□□□ -0.47
RPL39P62891 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC12.13□□□□□ -0.47
RPL39P62891 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 ITM2C-210ENST00000620962 501 ntBASIC12.13□□□□□ -0.47
RPL39P62891 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 AC024909.3-201ENST00000611513 2257 ntBASIC12.13□□□□□ -0.47
RPL39P62891 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
RPL39P62891 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
RPL39P62891 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.13□□□□□ -0.47
RPL39P62891 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 HLA-A-202ENST00000376806 1854 ntBASIC12.12□□□□□ -0.47
RPL39P62891 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC12.12□□□□□ -0.47
RPL39P62891 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
RPL39P62891 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
RPL39P62891 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC12.12□□□□□ -0.47
RPL39P62891 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
RPL39P62891 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC12.12□□□□□ -0.47
RPL39P62891 AC128688.1-201ENST00000487626 519 ntBASIC12.12□□□□□ -0.47
RPL39P62891 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms