Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 AC092053.1-201ENST00000605787 1936 ntBASIC15.31■□□□□ 0.04
CLRN1P58418 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
CLRN1P58418 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 DFFB-203ENST00000341385 572 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC15.31■□□□□ 0.04
CLRN1P58418 BX005266.1-201ENST00000473402 457 ntBASIC15.31■□□□□ 0.04
CLRN1P58418 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 AC106795.1-205ENST00000512851 1056 ntBASIC15.31■□□□□ 0.04
CLRN1P58418 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.31■□□□□ 0.04
CLRN1P58418 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 MTDHP3-201ENST00000594186 672 ntBASIC15.31■□□□□ 0.04
CLRN1P58418 AC073592.4-201ENST00000623827 446 ntBASIC15.31■□□□□ 0.04
CLRN1P58418 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC15.31■□□□□ 0.04
CLRN1P58418 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.31■□□□□ 0.04
CLRN1P58418 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CLRN1P58418 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CLRN1P58418 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 TMEM19-201ENST00000266673 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CLRN1P58418 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC15.3■□□□□ 0.04
CLRN1P58418 LSM5-204ENST00000409909 740 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 TSPY19P-201ENST00000418461 509 ntBASIC15.3■□□□□ 0.04
CLRN1P58418 TSPY18P-201ENST00000441642 509 ntBASIC15.3■□□□□ 0.04
CLRN1P58418 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN1P58418 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC15.3■□□□□ 0.04
CLRN1P58418 AC124947.2-201ENST00000547118 1133 ntBASIC15.3■□□□□ 0.04
CLRN1P58418 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CLRN1P58418 AL139288.1-201ENST00000623748 933 ntBASIC15.3■□□□□ 0.04
CLRN1P58418 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CLRN1P58418 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.3■□□□□ 0.04
CLRN1P58418 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC15.29■□□□□ 0.04
CLRN1P58418 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC15.29■□□□□ 0.04
CLRN1P58418 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLRN1P58418 AL356309.3-201ENST00000624132 1934 ntBASIC15.29■□□□□ 0.04
CLRN1P58418 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CLRN1P58418 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
CLRN1P58418 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms