Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
FOXA3P55318 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
FOXA3P55318 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC12.91□□□□□ -0.34
FOXA3P55318 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
FOXA3P55318 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
FOXA3P55318 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PHB2-202ENST00000440277 996 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA3P55318 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA3P55318 AL023803.3-201ENST00000615559 522 ntBASIC12.9□□□□□ -0.34
FOXA3P55318 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC12.9□□□□□ -0.34
FOXA3P55318 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
FOXA3P55318 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
FOXA3P55318 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
FOXA3P55318 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
FOXA3P55318 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.35
FOXA3P55318 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC12.9□□□□□ -0.35
FOXA3P55318 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
FOXA3P55318 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
FOXA3P55318 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 FAM197Y1-201ENST00000421178 764 ntBASIC12.89□□□□□ -0.35
FOXA3P55318 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC12.89□□□□□ -0.35
FOXA3P55318 TSPY17P-201ENST00000450329 467 ntBASIC12.89□□□□□ -0.35
FOXA3P55318 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 AP003041.3-201ENST00000527151 707 ntBASIC12.89□□□□□ -0.35
FOXA3P55318 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA3P55318 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC12.89□□□□□ -0.35
FOXA3P55318 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC12.89□□□□□ -0.35
FOXA3P55318 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC12.89□□□□□ -0.35
FOXA3P55318 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
FOXA3P55318 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 TK2-221ENST00000620035 5060 ntTSL 2 BASIC12.89□□□□□ -0.35
FOXA3P55318 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
FOXA3P55318 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
FOXA3P55318 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms