Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
HOXA1P49639 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXA1P49639 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HOXA1P49639 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 AC144831.1-201ENST00000573312 2656 ntBASIC14.26□□□□□ -0.13
HOXA1P49639 KRT17P2-201ENST00000300992 1314 ntBASIC14.26□□□□□ -0.13
HOXA1P49639 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
HOXA1P49639 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXA1P49639 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXA1P49639 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 GPX4-207ENST00000589115 812 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC14.26□□□□□ -0.13
HOXA1P49639 GLDC-219ENST00000640208 420 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HOXA1P49639 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.26□□□□□ -0.13
HOXA1P49639 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 PSMD11-202ENST00000457654 2159 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXA1P49639 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXA1P49639 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXA1P49639 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC14.25□□□□□ -0.13
HOXA1P49639 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXA1P49639 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXA1P49639 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC14.25□□□□□ -0.13
HOXA1P49639 Telomerase-vert.1-201ENST00000363312 438 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXA1P49639 PVRIG2P-201ENST00000435460 978 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 DDX43P3-201ENST00000441064 443 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXA1P49639 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXA1P49639 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXA1P49639 NAPSB-206ENST00000562112 1266 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC14.25□□□□□ -0.13
HOXA1P49639 NEK4P2-201ENST00000580004 1012 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 NT5C-210ENST00000582160 860 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXA1P49639 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HOXA1P49639 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.25□□□□□ -0.13
HOXA1P49639 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 AL137784.3-201ENST00000623858 2288 ntBASIC14.25□□□□□ -0.13
HOXA1P49639 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HOXA1P49639 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC14.24□□□□□ -0.13
HOXA1P49639 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
HOXA1P49639 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HOXA1P49639 PAUPAR-201ENST00000630360 2965 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms