Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.79■□□□□ 0.28
SHMT2P34897 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SHMT2P34897 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SHMT2P34897 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.78■□□□□ 0.28
SHMT2P34897 PKD1P1-201ENST00000458669 6805 ntBASIC16.78■□□□□ 0.28
SHMT2P34897 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 ARTN-206ENST00000472435 402 ntTSL 3 BASIC16.78■□□□□ 0.28
SHMT2P34897 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.78■□□□□ 0.28
SHMT2P34897 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.78■□□□□ 0.28
SHMT2P34897 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
SHMT2P34897 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.78■□□□□ 0.28
SHMT2P34897 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SHMT2P34897 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 AC016396.2-201ENST00000562575 1417 ntBASIC16.78■□□□□ 0.28
SHMT2P34897 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SHMT2P34897 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SHMT2P34897 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.28
SHMT2P34897 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.77■□□□□ 0.28
SHMT2P34897 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.77■□□□□ 0.28
SHMT2P34897 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.77■□□□□ 0.28
SHMT2P34897 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 KRT18P27-201ENST00000427733 1299 ntBASIC16.77■□□□□ 0.28
SHMT2P34897 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.77■□□□□ 0.28
SHMT2P34897 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.77■□□□□ 0.28
SHMT2P34897 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.77■□□□□ 0.28
SHMT2P34897 CYGB-205ENST00000590175 830 ntTSL 3 BASIC16.77■□□□□ 0.28
SHMT2P34897 AL049840.3-201ENST00000602669 611 ntBASIC16.77■□□□□ 0.28
SHMT2P34897 AL353135.1-201ENST00000606729 504 ntBASIC16.77■□□□□ 0.28
SHMT2P34897 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SHMT2P34897 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SHMT2P34897 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.77■□□□□ 0.28
SHMT2P34897 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.77■□□□□ 0.27
SHMT2P34897 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHMT2P34897 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
SHMT2P34897 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.77■□□□□ 0.27
SHMT2P34897 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHMT2P34897 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.77■□□□□ 0.27
SHMT2P34897 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.27
SHMT2P34897 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHMT2P34897 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SHMT2P34897 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.77■□□□□ 0.27
SHMT2P34897 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.77■□□□□ 0.27
SHMT2P34897 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
SHMT2P34897 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
SHMT2P34897 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
SHMT2P34897 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 153.4 ms