Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.23■□□□□ 0.35
PTPN4P29074 VENTXP7-201ENST00000475503 772 ntBASIC17.23■□□□□ 0.35
PTPN4P29074 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.23■□□□□ 0.35
PTPN4P29074 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
PTPN4P29074 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.23■□□□□ 0.35
PTPN4P29074 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 AL353692.3-201ENST00000407031 1396 ntBASIC17.23■□□□□ 0.35
PTPN4P29074 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.23■□□□□ 0.35
PTPN4P29074 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
PTPN4P29074 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.23■□□□□ 0.35
PTPN4P29074 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
PTPN4P29074 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 AC092068.3-201ENST00000587894 2016 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN4P29074 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN4P29074 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 RN7SL606P-201ENST00000472779 293 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN4P29074 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 AC099336.1-202ENST00000602961 463 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 AC138894.3-201ENST00000603787 634 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.22■□□□□ 0.35
PTPN4P29074 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.22■□□□□ 0.35
PTPN4P29074 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.22■□□□□ 0.35
PTPN4P29074 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
PTPN4P29074 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC17.22■□□□□ 0.35
PTPN4P29074 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
PTPN4P29074 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.21■□□□□ 0.35
PTPN4P29074 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
PTPN4P29074 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
PTPN4P29074 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC17.21■□□□□ 0.35
PTPN4P29074 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.21■□□□□ 0.35
PTPN4P29074 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 AL513523.2-202ENST00000427283 2040 ntBASIC17.21■□□□□ 0.35
PTPN4P29074 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC17.21■□□□□ 0.35
PTPN4P29074 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
PTPN4P29074 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms